5C91
NEDD4 HECT with covalently bound indole-based inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-03-10 |
Detector | PSI PILATUS 6M |
Wavelength(s) | 1.033 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 175.200, 38.730, 60.360 |
Unit cell angles | 90.00, 93.13, 90.00 |
Refinement procedure
Resolution | 31.860 - 2.440 |
R-factor | 0.2501 |
Rwork | 0.248 |
R-free | 0.29770 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2xbf |
RMSD bond length | 0.005 |
RMSD bond angle | 1.036 |
Data reduction software | xia2 |
Data scaling software | xia2 (0.3.6.3) |
Refinement software | REFMAC (5.8.0049) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 32.200 | 32.200 | 2.500 |
High resolution limit [Å] | 2.440 | 10.910 | 2.440 |
Rmerge | 0.091 | 0.018 | 0.602 |
Rpim | 0.071 | 0.014 | 0.472 |
Total number of observations | 47656 | 566 | 3418 |
Number of reflections | 15105 | ||
<I/σ(I)> | 11.2 | 48.4 | 2 |
Completeness [%] | 98.2 | 93.7 | 98.7 |
Redundancy | 3.2 | 3.1 | 3.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 100 mM MES, 35 mM calcium chloride, 5 mM TCEP, 6% PEG400 |