5C55
Crystal structure of the Y138F mutant of C.glutamicum N-acetylneuraminic acid lyase in complex with pyruvate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-04-25 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97946 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 55.893, 149.959, 143.444 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 36.300 - 1.700 |
R-factor | 0.1459 |
Rwork | 0.144 |
R-free | 0.17610 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5c54 |
RMSD bond length | 0.019 |
RMSD bond angle | 1.855 |
Data scaling software | HKL-2000 |
Refinement software | REFMAC (5.7.0029) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.730 |
High resolution limit [Å] | 1.700 | 4.610 | 1.700 |
Rmerge | 0.065 | 0.035 | 0.632 |
Rmeas | 0.071 | 0.038 | 0.681 |
Rpim | 0.026 | 0.014 | 0.249 |
Total number of observations | 448127 | ||
Number of reflections | 65906 | ||
<I/σ(I)> | 13.6 | ||
Completeness [%] | 97.8 | 94.9 | 95.9 |
Redundancy | 6.8 | 6.9 | 7 |
CC(1/2) | 0.999 | 0.868 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 291.15 | 0.1 M Bis-Tris, 32% PEG 3350, 0.6 M ammonium acetate |