5BTG
Crystal structure of a topoisomerase II complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-B |
Synchrotron site | APS |
Beamline | 23-ID-B |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-12-07 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1.033 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 108.094, 82.989, 129.101 |
Unit cell angles | 90.00, 108.76, 90.00 |
Refinement procedure
Resolution | 46.325 - 2.500 |
R-factor | 0.2268 |
Rwork | 0.226 |
R-free | 0.24910 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5bs8 |
RMSD bond length | 0.004 |
RMSD bond angle | 0.689 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.330 | 2.589 | |
High resolution limit [Å] | 2.500 | 11.180 | 2.500 |
Rmerge | 0.139 | 0.026 | |
Rmeas | 0.162 | 0.036 | 1.364 |
Total number of observations | 283517 | ||
Number of reflections | 283502 | 1611 | 10601 |
<I/σ(I)> | 8.93 | 22.06 | 1.37 |
Completeness [%] | 99.7 | 96.6 | 99.57 |
Redundancy | 3.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 294 | 100 mM Tris-HCl, 13-15% PEG 4000, 200 mM MgCl2, 6.25% PEG 400 |