5BPU
Crystal structure of Norrin, a Wnt signalling activator, Crystal Form I
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I24 |
Synchrotron site | Diamond |
Beamline | I24 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-07-21 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.96863 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 46.370, 79.100, 234.340 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 65.559 - 2.400 |
R-factor | 0.2189 |
Rwork | 0.217 |
R-free | 0.26280 |
Structure solution method | SAD |
RMSD bond length | 0.004 |
RMSD bond angle | 0.932 |
Data reduction software | MOSFLM |
Data scaling software | Aimless (0.1.29) |
Phasing software | PHENIX |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 65.560 | 65.560 | 2.490 |
High resolution limit [Å] | 2.400 | 8.980 | 2.400 |
Rmerge | 0.133 | 0.039 | |
Rpim | 0.061 | 0.020 | 0.423 |
Total number of observations | 194342 | 3936 | 20541 |
Number of reflections | 34791 | ||
<I/σ(I)> | 7.8 | 20.5 | 1.9 |
Completeness [%] | 99.9 | 99.8 | 100 |
Redundancy | 5.6 | 5 | 5.7 |
CC(1/2) | 0.995 | 0.995 | 0.351 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 294 | 0.1 M sodium acetate, pH 5.0, 5% PGA-LM, 30% PEG550MME |