5YYF
Crystal structure of AF9 YEATS domain in complex with a peptide inhibitor "PHQ-H3(Q5-K9)" modified at K9 with 2-furancarboyl group
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-10-23 |
Detector | MARRESEARCH |
Wavelength(s) | 0.9792 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 91.536, 43.992, 89.053 |
Unit cell angles | 90.00, 95.86, 90.00 |
Refinement procedure
Resolution | 42.286 - 1.903 |
R-factor | 0.2029 |
Rwork | 0.202 |
R-free | 0.22420 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4tmp |
RMSD bond length | 0.008 |
RMSD bond angle | 0.861 |
Data reduction software | DENZO |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | PHENIX ((1.12rc1_2801: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 42.286 | 1.930 |
High resolution limit [Å] | 1.900 | 1.900 |
Rmerge | 0.102 | 0.897 |
Rpim | 0.050 | 0.448 |
Number of reflections | 27771 | 1373 |
<I/σ(I)> | 25.78 | |
Completeness [%] | 99.2 | |
Redundancy | 5.1 | |
CC(1/2) | 0.906 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.6 | 277 | 0.2M ammonium sulfate, 0.1M sodium citrate tribasic dihydrate, pH 5.6, 25 % (w/v) PEG 4000 |