5OY3
The structural basis of the histone demethylase KDM6B histone 3 lysine 27 specificity
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-2 |
Synchrotron site | ESRF |
Beamline | ID23-2 |
Temperature [K] | 80 |
Detector technology | CCD |
Collection date | 2016-04-28 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.873 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 68.908, 68.908, 228.476 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.726 - 2.136 |
R-factor | 0.1686 |
Rwork | 0.165 |
R-free | 0.22070 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3avr |
RMSD bond length | 0.012 |
RMSD bond angle | 1.109 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10.1_2155: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.726 | |
High resolution limit [Å] | 2.136 | |
Rmerge | 0.174 | 1.397 |
Rmeas | 0.182 | 1.463 |
Rpim | 0.055 | 0.430 |
Number of reflections | 31653 | |
<I/σ(I)> | 12.67 | |
Completeness [%] | 99.9 | |
Redundancy | 5.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 277 | 0.1M TRIS pH 7.5, 15%(v/v) Tert-butanol, |