5OWP
Crystal structure of glycopeptide "GVTSAfPDT*RPAP" in complex with scFv-SM3
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-02-12 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.97 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 35.399, 68.151, 90.358 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 90.360 - 1.850 |
R-factor | 0.19599 |
Rwork | 0.194 |
R-free | 0.25614 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5a2k |
RMSD bond length | 0.017 |
RMSD bond angle | 1.854 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0155) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 90.360 | 1.950 |
High resolution limit [Å] | 1.850 | 1.850 |
Rpim | 0.049 | 0.394 |
Number of reflections | 19335 | |
<I/σ(I)> | 10.9 | 1.9 |
Completeness [%] | 99.7 | 99.8 |
Redundancy | 6.4 | 6.3 |
CC(1/2) | 0.998 | 0.685 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | PEG 3350, disodium hydrogen phosphate |