5OWP

Crystal structure of glycopeptide "GVTSAfPDT*RPAP" in complex with scFv-SM3

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	H	Ig heavy chain V-III region J606,Ig lambda-1 chain V region H2020	polymer	244	25758.3	1	UniProt (P01801) UniProt (P01726) Pfam (PF07686) In PDB	Mus musculus (Mouse)
2	D	5,6-DIHYDRO-BENZO[H]CINNOLIN-3-YLAMINE	polymer	8	832.9	1		synthetic construct
3	H	1,2-ETHANEDIOL	non-polymer		62.1	3	Chemie (EDO)
4	D	2-acetamido-2-deoxy-alpha-D-galactopyranose	non-polymer		221.2	1	Chemie (A2G)
5		water	water		18.0	143	Chemie (HOH)

Sequence modifications

H: 6 - 115 (UniProt: P01801)

PDB	External Database	Details
Gln 1	-	expression tag
Val 2	-	expression tag
Gln 3	-	expression tag
Leu 4	-	expression tag
Gln 5	-	expression tag
Gly 100	-	insertion
Val 101	-	insertion
Gly 102	Thr 100	conflict
Gln 103	Gly 101	conflict
Thr 114	Leu 110	conflict
Thr 116	-	linker
Val 117	-	linker
Ser 118	-	linker
Ser 990	-	linker
Ser 991	-	linker
Ser 992	-	linker
Gly 993	-	linker
Gly 994	-	linker
Gly 995	-	linker
Gly 996	-	linker
Ser 997	-	linker
Gly 998	-	linker
Gly 999	-	linker
Gly 1000	-	linker
Gly 1001	-	linker
Gly 1002	-	linker
Ser 1003	-	linker
Ser 1004	-	linker
Gly 1005	-	linker
Ser 1006	-	linker

H: 1007 - 1117 (UniProt: P01726)

PDB	External Database	Details
Asp 1008	Gln 20	conflict
Ile 1009	Ala 21	conflict
Ser 1032	Thr 44	conflict
Ser 1039	Gly 51	conflict

Contents of the asymmetric unit

Polymers	Number of chains	2
	Total formula weight	26591.2
Non-Polymers*	Number of molecules	4
	Total formula weight	407.4
All*	Total formula weight	26998.6

*Water molecules are not included.