5OWP
Crystal structure of glycopeptide "GVTSAfPDT*RPAP" in complex with scFv-SM3
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (H) | Ig heavy chain V-III region J606,Ig lambda-1 chain V region H2020 | polymer | 244 | 25758.3 | 1 | UniProt (P01801) UniProt (P01726) Pfam (PF07686) | Mus musculus (Mouse) | |
| 2 | B (D) | 5,6-DIHYDRO-BENZO[H]CINNOLIN-3-YLAMINE | polymer | 8 | 832.9 | 1 | synthetic construct | ||
| 3 | C, D, E (H) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 3 | Chemie (EDO) | |||
| 4 | F (D) | 2-acetamido-2-deoxy-alpha-D-galactopyranose | non-polymer | 221.2 | 1 | Chemie (A2G) | |||
| 5 | G, H (H, D) | water | water | 18.0 | 143 | Chemie (HOH) |
Sequence modifications
H: 6 - 115 (UniProt: P01801)
H: 1007 - 1117 (UniProt: P01726)
| PDB | External Database | Details |
|---|---|---|
| Gln 1 | - | expression tag |
| Val 2 | - | expression tag |
| Gln 3 | - | expression tag |
| Leu 4 | - | expression tag |
| Gln 5 | - | expression tag |
| Gly 100 | - | insertion |
| Val 101 | - | insertion |
| Gly 102 | Thr 100 | conflict |
| Gln 103 | Gly 101 | conflict |
| Thr 114 | Leu 110 | conflict |
| Thr 116 | - | linker |
| Val 117 | - | linker |
| Ser 118 | - | linker |
| Ser 990 | - | linker |
| Ser 991 | - | linker |
| Ser 992 | - | linker |
| Gly 993 | - | linker |
| Gly 994 | - | linker |
| Gly 995 | - | linker |
| Gly 996 | - | linker |
| Ser 997 | - | linker |
| Gly 998 | - | linker |
| Gly 999 | - | linker |
| Gly 1000 | - | linker |
| Gly 1001 | - | linker |
| Gly 1002 | - | linker |
| Ser 1003 | - | linker |
| Ser 1004 | - | linker |
| Gly 1005 | - | linker |
| Ser 1006 | - | linker |
| PDB | External Database | Details |
|---|---|---|
| Asp 1008 | Gln 20 | conflict |
| Ile 1009 | Ala 21 | conflict |
| Ser 1032 | Thr 44 | conflict |
| Ser 1039 | Gly 51 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 26591.2 | |
| Non-Polymers* | Number of molecules | 4 |
| Total formula weight | 407.4 | |
| All* | Total formula weight | 26998.6 |
