5MU6
Human N-myristoyltransferase (NMT1) with Myristoyl-CoA and IMP-1088 inhibitor bound
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-11-22 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.92819 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 78.730, 180.730, 58.990 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 72.179 - 1.880 |
R-factor | 0.206 |
Rwork | 0.204 |
R-free | 0.24670 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4c2y |
RMSD bond length | 0.008 |
RMSD bond angle | 1.242 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.17) |
Phasing software | PHASER (2.5.6) |
Refinement software | REFMAC (5.8.0073) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 72.180 | 1.930 |
High resolution limit [Å] | 1.880 | 1.880 |
Rmerge | 0.254 | 1.654 |
Rpim | 0.101 | 0.716 |
Number of reflections | 69366 | 5068 |
<I/σ(I)> | 7.8 | |
Completeness [%] | 99.9 | 99.9 |
Redundancy | 7.3 | 6.3 |
CC(1/2) | 0.991 | 0.501 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 23% (v/w) MME2K, 0.2M KBr, 100 mM sodium citrate pH 4.5, and 5% (v/v) glycerol |