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5MCP

Structure of IMP dehydrogenase from Ashbya gossypii bound to ATP

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I03
Synchrotron siteDiamond
BeamlineI03
Temperature [K]100
Detector technologyPIXEL
Collection date2015-09-21
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.99987
Spacegroup nameP 1 21 1
Unit cell lengths127.891, 152.090, 152.255
Unit cell angles90.00, 93.03, 90.00
Refinement procedure
Resolution152.042 - 2.400
R-factor0.2505
Rwork0.249
R-free0.27120
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4z0g
RMSD bond length0.003
RMSD bond angle0.588
Data reduction softwareDIALS
Data scaling softwareDIALS
Phasing softwarePHASER
Refinement softwarePHENIX ((1.11_2567: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]152.0422.440
High resolution limit [Å]2.4002.400
Rmerge0.2061.487
Number of reflections226714
<I/σ(I)>5.81.3
Completeness [%]100.0100
Redundancy6.56.3
CC(1/2)0.9940.686
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2970.05 M Imidazole + 0.05 M Mes; pH 6.5 20 % Glycerol 20 % PEG-4000 0.02 M D-glucose 0.02 M D-Mannose 0.02 M D_Galactose 0.02 M L-Fucose 0.02 M C-Xylose 0.02 M N-Acetyl-D-Glucosamine

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PDB entries from 2024-05-15

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