5LJ0
Crystal structure of human ATAD2 bromodomain in complex with 8-(((3R,4R,5S)-3-((4,4-difluorocyclohexyl)methoxy)-5-methoxypiperidin-4-yl)amino)-3-methyl-5-(5-methylpyridin-3-yl)-1,7-naphthyridin-2(1H)-one
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID29 |
Synchrotron site | ESRF |
Beamline | ID29 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-02-07 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.95373 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 79.158, 79.158, 135.857 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 68.550 - 1.820 |
R-factor | 0.17424 |
Rwork | 0.174 |
R-free | 0.18256 |
RMSD bond length | 0.005 |
RMSD bond angle | 0.949 |
Data reduction software | XDS |
Data scaling software | SCALA |
Refinement software | REFMAC (5.8.0073) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 135.860 | 1.920 |
High resolution limit [Å] | 1.820 | 1.820 |
Rmerge | 0.072 | 0.507 |
Number of reflections | 23289 | |
<I/σ(I)> | 19.3 | 5.2 |
Completeness [%] | 100.0 | 100 |
Redundancy | 10.6 | 11.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | 0.1M trisHCl, pH 7.0-8.0, 1.2-1.5M ammonium sulphate, 20-25% PEG3350,277K |