5I35
Structure of the Human mitochondrial kinase COQ8A R611K with AMPPNP (Cerebellar Ataxia and Ubiquinone Deficiency Through Loss of Unorthodox Kinase Activity)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-B |
Synchrotron site | APS |
Beamline | 23-ID-B |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-11-13 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.96862 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 150.050, 59.120, 51.000 |
Unit cell angles | 90.00, 97.69, 90.00 |
Refinement procedure
Resolution | 44.670 - 2.300 |
R-factor | 0.18952 |
Rwork | 0.183 |
R-free | 0.25887 |
Structure solution method | SAD |
RMSD bond length | 0.019 |
RMSD bond angle | 2.152 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.360 |
High resolution limit [Å] | 2.300 | 2.300 |
Rmerge | 0.087 | 1.232 |
Number of reflections | 19840 | |
<I/σ(I)> | 12.5 | 1.65 |
Completeness [%] | 100.0 | 100 |
Redundancy | 7.37 | 7.61 |
CC(1/2) | 0.998 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | One part of ADCK3 R611K, 0.2 mM, AMPPNP 2 mM, MgCl2, 4mM, mixed with an equal volume of sodium polyacrylate 5100, 26%; magnesium chloride, 20 mM; HEPES, 100 mM, pH 7.5 |