5HKO
Crystal structure of ABC transporter Solute Binding Protein MSMEG_3598 from Mycobacterium smegmatis str. MC2 155, target EFI-510969, in complex with L-sorbitol
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 31-ID |
Synchrotron site | APS |
Beamline | 31-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-10-20 |
Detector | RAYONIX MX225HE |
Wavelength(s) | 0.9793 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 62.947, 62.940, 73.153 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.710 - 1.200 |
R-factor | 0.1568 |
Rwork | 0.156 |
R-free | 0.17790 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4rs3 |
RMSD bond length | 0.036 |
RMSD bond angle | 2.828 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0123) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.240 |
High resolution limit [Å] | 1.200 | 2.590 | 1.200 |
Rmerge | 0.091 | 0.054 | 0.685 |
Rmeas | 0.098 | 0.058 | 0.740 |
Rpim | 0.037 | 0.023 | 0.277 |
Total number of observations | 650580 | ||
Number of reflections | 91508 | ||
<I/σ(I)> | 8.8 | ||
Completeness [%] | 99.9 | 99.8 | 99.7 |
Redundancy | 7.1 | 6.6 | 7 |
CC(1/2) | 0.997 | 0.829 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 298 | Protein (10 mM HEPES pH 7.5, 5 mM DTT, 10 mM L-sorbitol); Reservoir (MCSG4 A7)(0.2 M Zinc Acetate Dihydrate, 0.1 M Imidazole pH 8, 2.5 M Sodium Chloride); Cryoprotection (20% Diethylene Glycol, 80% Reservoir) |