Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5F4E

Crystal structure of the human sperm Izumo1 and egg Juno complex

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsCLSI BEAMLINE 08ID-1
Synchrotron siteCLSI
Beamline08ID-1
Temperature [K]100
Detector technologyCCD
Collection date2015-07-24
DetectorRAYONIX MX-300
Wavelength(s)1.77
Spacegroup nameC 1 2 1
Unit cell lengths148.000, 55.800, 81.600
Unit cell angles90.00, 103.60, 90.00
Refinement procedure
Resolution47.962 - 2.400
R-factor0.1822
Rwork0.180
R-free0.22170
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4lrh
RMSD bond length0.010
RMSD bond angle1.183
Data reduction softwareXDS
Data scaling softwareAimless (0.5.8)
Phasing softwarePHASER
Refinement softwarePHENIX (1.9_1692)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]47.96247.9602.490
High resolution limit [Å]2.4008.9802.400
Rmerge0.0760.0550.679
Rpim0.0300.0230.270
Total number of observations184910346918998
Number of reflections25587
<I/σ(I)>14.433.62.8
Completeness [%]100.099.499.8
Redundancy7.26.67.2
CC(1/2)0.9980.9960.954
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.52950.1 M MES [pH 6.5], 20% (w/v) PEG 4000 and 0.6 M NaCl

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon