5CDM
2.5A structure of QPT-1 with S.aureus DNA gyrase and DNA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2011-07-06 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9173 |
Spacegroup name | P 61 |
Unit cell lengths | 93.884, 93.884, 412.482 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 36.785 - 2.500 |
R-factor | 0.1652 |
Rwork | 0.163 |
R-free | 0.19230 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2xcs |
RMSD bond length | 0.010 |
RMSD bond angle | 1.135 |
Data reduction software | MOSFLM |
Data scaling software | SCALA (3.3.16) |
Phasing software | PHENIX |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 36.785 | 36.785 | 2.640 |
High resolution limit [Å] | 2.500 | 7.910 | 2.500 |
Rmerge | 0.068 | 0.447 | |
Rmeas | 0.123 | ||
Rpim | 0.073 | 0.047 | 0.358 |
Total number of observations | 166459 | 5927 | 21033 |
Number of reflections | 67361 | ||
<I/σ(I)> | 6.7 | 13.9 | 1.9 |
Completeness [%] | 95.4 | 94 | 94.5 |
Redundancy | 2.5 | 2.8 | 2.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 6.2 | 293 | 150mM BisTris pH6.2, 11% PEG 5000 MME |