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5CDM

2.5A structure of QPT-1 with S.aureus DNA gyrase and DNA

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0003918molecular_functionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
A0005524molecular_functionATP binding
A0006259biological_processDNA metabolic process
A0006265biological_processDNA topological change
B0003677molecular_functionDNA binding
B0003918molecular_functionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
B0005524molecular_functionATP binding
B0006265biological_processDNA topological change
C0003677molecular_functionDNA binding
C0003918molecular_functionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
C0005524molecular_functionATP binding
C0006259biological_processDNA metabolic process
C0006265biological_processDNA topological change
D0003677molecular_functionDNA binding
D0003918molecular_functionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
D0005524molecular_functionATP binding
D0006265biological_processDNA topological change
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue MN B 1001
ChainResidue
BASP508
BASP510
BHOH1102
BHOH1108
BHOH1114
BHOH1127

site_idAC2
Number of Residues4
Detailsbinding site for residue GOL B 1002
ChainResidue
NDG2013
BASN475
BASN476
BGLU477

site_idAC3
Number of Residues3
Detailsbinding site for residue SO4 A 501
ChainResidue
AASN313
ASER315
AVAL316

site_idAC4
Number of Residues5
Detailsbinding site for residue NA A 502
ChainResidue
ATYR322
ATHR325
AGLN328
AHOH684
AHOH689

site_idAC5
Number of Residues5
Detailsbinding site for residue GOL A 503
ChainResidue
AARG47
AARG48
AGLU156
APRO157
AHOH632

site_idAC6
Number of Residues6
Detailsbinding site for residue MN D 701
ChainResidue
DASP508
DASP510
DHOH804
DHOH808
DHOH811
DHOH816

site_idAC7
Number of Residues11
Detailsbinding site for residue 54Q I 2101
ChainResidue
APTR123
AHOH606
DGLY436
DASP437
DARG458
DGLY459
DHOH802
FDC8
IDC2012
IDG2013
NDG2009

site_idAC8
Number of Residues4
Detailsbinding site for residue DT N 2101
ChainResidue
ASER240
ASER330
CARG414
NDT2019

site_idAC9
Number of Residues11
Detailsbinding site for residue 54Q N 2102
ChainResidue
BGLY436
BASP437
BARG458
BGLY459
BHOH1101
CPTR123
EDC8
IDG2009
NDC2012
NDG2013
NHOH2214

Functional Information from PROSITE/UniProt
site_idPS00177
Number of Residues9
DetailsTOPOISOMERASE_II DNA topoisomerase II signature. LVEGDSAGG
ChainResidueDetails
BLEU433-GLY441

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: O-(5'-phospho-DNA)-tyrosine intermediate => ECO:0000255|HAMAP-Rule:MF_01897
ChainResidueDetails
APTR123
CPTR123
BASP510
DGLU435
DASP508
DASP510

site_idSWS_FT_FI2
Number of Residues4
DetailsSITE: Interaction with DNA => ECO:0000255|HAMAP-Rule:MF_01898
ChainResidueDetails
BLYS460
BASN463
DLYS460
DASN463

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PDB entries from 2024-07-10

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