5CCV
Crystal structure of full-length NS5 from dengue virus type 3
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | APS BEAMLINE 21-ID-D |
| Synchrotron site | APS |
| Beamline | 21-ID-D |
| Temperature [K] | 100 |
| Detector technology | IMAGE PLATE |
| Collection date | 2014-11-02 |
| Detector | MAR scanner 300 mm plate |
| Wavelength(s) | 0.978720 |
| Spacegroup name | P 32 2 1 |
| Unit cell lengths | 215.314, 215.314, 480.683 |
| Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
| Resolution | 49.217 - 3.600 |
| R-factor | 0.2386 |
| Rwork | 0.238 |
| R-free | 0.27370 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | PDB entries 3P97 and 4HHJ |
| RMSD bond length | 0.002 |
| RMSD bond angle | 0.478 |
| Data reduction software | HKL-2000 (2.3.7) |
| Data scaling software | SCALEPACK |
| Phasing software | PHASER (2.5.6) |
| Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 50.000 | 50.000 | 3.660 |
| High resolution limit [Å] | 3.600 | 9.750 | 3.600 |
| Rmerge | 0.330 | 0.164 | |
| Rmeas | 0.339 | 0.169 | |
| Rpim | 0.097 | 0.039 | 0.866 |
| Total number of observations | 2458145 | ||
| Number of reflections | 149778 | ||
| <I/σ(I)> | 4.6 | ||
| Completeness [%] | 100.0 | 100 | 100 |
| Redundancy | 16.4 | 19 | 6.2 |
| CC(1/2) | 0.964 | 0.157 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 7 | 290 | 1.0 M succinic acid (pH 7.0), 0.1 M HEPES (pH 7.0), 1% PEG monomethylether 2000 |
