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5A3Q

Crystal structure of the (SR) Calcium ATPase E2-vanadate complex bound to thapsigargin and TNP-AMPPCP

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)
Synchrotron sitePETRA III, EMBL c/o DESY
BeamlineP14 (MX2)
Temperature [K]100
Detector technologyPIXEL
Collection date2013-05-11
DetectorDECTRIS PILATUS 6M
Spacegroup nameP 21 21 2
Unit cell lengths86.427, 118.781, 141.828
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution73.803 - 3.050
R-factor0.2027
Rwork0.200
R-free0.25790
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1xp5
RMSD bond length0.011
RMSD bond angle0.797
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX ((1.10_2152: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]141.8003.240
High resolution limit [Å]3.0503.050
Rmerge0.1200.880
Number of reflections28547
<I/σ(I)>132.3
Completeness [%]100.0100
Redundancy7.37.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.829219.5% (W/V) PEG2000-MME, 11% (V/V) GLYCEROL, 100 MM MGCL2, 3% (V/V) T-BUTANOL. THE CRYSTALLIZATION DROP WAS EQUILIBRATED AT 19 DEGREES C, AND THE CRYSTAL WAS FLASH FROZEN 13 DAYS AFTER SET-UP., pH 6.8

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PDB entries from 2024-05-15

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