4Z87
Structure of the IMP dehydrogenase from Ashbya gossypii bound to GDP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-10-22 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1.00004 |
Spacegroup name | P 4 |
Unit cell lengths | 122.042, 122.042, 147.613 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.029 - 2.250 |
R-factor | 0.1964 |
Rwork | 0.195 |
R-free | 0.22540 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4z0g |
RMSD bond length | 0.008 |
RMSD bond angle | 0.737 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (dev_1839) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.050 | 2.310 |
High resolution limit [Å] | 2.250 | 2.250 |
Rmerge | 0.110 | 1.650 |
Number of reflections | 102432 | |
<I/σ(I)> | 26.04 | 1.98 |
Completeness [%] | 100.0 | 100 |
Redundancy | 13.84 | 14.15 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298 | 40% (v/v) 1,2-propanediol, 0.1 M sodium acetate, pH 4.5 |