4Z47
Structure of the enzyme-product complex resulting from TDG action on a GU mismatch in the presence of excess base
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-07-15 |
Detector | PSI PILATUS 6M |
Wavelength(s) | 1.00000 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 89.305, 53.322, 82.297 |
Unit cell angles | 90.00, 95.31, 90.00 |
Refinement procedure
Resolution | 45.730 - 1.450 |
R-factor | 0.1428 |
Rwork | 0.140 |
R-free | 0.19530 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4fnc |
RMSD bond length | 0.023 |
RMSD bond angle | 2.274 |
Data reduction software | MOSFLM |
Data scaling software | Aimless (0.5.4) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0107) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 45.730 | 45.730 | 1.470 |
High resolution limit [Å] | 1.450 | 7.940 | 1.450 |
Rmerge | 0.068 | 0.067 | |
Rpim | 0.020 | 0.018 | 0.722 |
Total number of observations | 760039 | 6311 | 33013 |
Number of reflections | 64847 | ||
<I/σ(I)> | 15.9 | 51.4 | 1.2 |
Completeness [%] | 94.9 | 99.6 | 89.8 |
Redundancy | 11.7 | 13.8 | 11 |
CC(1/2) | 0.999 | 0.995 | 0.645 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 298 | 30% PEG 4000, 0.2M ammonium acetate, 0.1M sodium acetate |