4YBR
Structure of Mycobacterium tuberculosis NadD in complex with NADP, P21212
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-06-09 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.97903 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 49.040, 141.430, 63.170 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 70.710 - 1.650 |
R-factor | 0.1911 |
Rwork | 0.190 |
R-free | 0.21630 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4s1o |
RMSD bond length | 0.010 |
RMSD bond angle | 1.371 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER (2.5.6) |
Refinement software | REFMAC (5.8.0103) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 70.710 | 1.740 | |
High resolution limit [Å] | 1.650 | 7.370 | 1.650 |
Rmerge | 0.064 | 0.030 | 0.823 |
Rmeas | 0.071 | 0.034 | 0.999 |
Total number of observations | 295263 | ||
Number of reflections | 53277 | 685 | 3444 |
<I/σ(I)> | 16.45 | 45.35 | 2.19 |
Completeness [%] | 98.9 | 97.7 | 92.4 |
Redundancy | 5.5 | 4.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.87 | 298 | 0.1M HEPES pH 7.5, 1.26M ammonium sulfate |