4Y29
Identification of a novel PPARg ligand that regulates metabolism
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-05-31 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.0050 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 43.624, 54.514, 66.402 |
Unit cell angles | 90.00, 107.07, 90.00 |
Refinement procedure
Resolution | 41.360 - 1.980 |
R-factor | 0.1791 |
Rwork | 0.177 |
R-free | 0.21870 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3u9q |
RMSD bond length | 0.026 |
RMSD bond angle | 2.069 |
Data reduction software | SCALEPACK |
Phasing software | PHASER (2.5.1) |
Refinement software | REFMAC (5.7.0029) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.010 |
High resolution limit [Å] | 1.980 | 5.370 | 1.980 |
Rmerge | 0.068 | 0.027 | 0.356 |
Total number of observations | 110768 | ||
Number of reflections | 21090 | ||
<I/σ(I)> | 11.6 | ||
Completeness [%] | 99.9 | 99.7 | 100 |
Redundancy | 5.3 | 5 | 5.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293.15 | 0.2 M Sodium thiocyanate, 20% w/v PEG 3350 |