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4Y1T

Structural basis for Ca2+-mediated interaction of the perforin C2 domain with lipid membranes

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAUSTRALIAN SYNCHROTRON BEAMLINE MX2
Synchrotron siteAustralian Synchrotron
BeamlineMX2
Temperature [K]100
Detector technologyCCD
Collection date2014-12-04
DetectorADSC QUANTUM 315r
Wavelength(s)0.953697
Spacegroup nameI 2 2 2
Unit cell lengths45.009, 59.828, 125.919
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution42.383 - 2.666
R-factor0.1709
Rwork0.168
R-free0.21530
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3nsj
RMSD bond length0.002
RMSD bond angle0.648
Data reduction softwareXDS
Data scaling softwareSCALA
Phasing softwarePHASER
Refinement softwarePHENIX ((phenix.refine: 1.9_1692))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]42.3882.810
High resolution limit [Å]2.6662.666
Rmerge0.0710.182
Number of reflections5115
<I/σ(I)>21.25
Completeness [%]99.7
Redundancy2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.52930.1 M HEPES sodium pH 7.5, 0.2 M calcium chloride dihydrate and 14% v/v polyethylene glycol 400

222036

PDB entries from 2024-07-03

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