4Y1T
Structural basis for Ca2+-mediated interaction of the perforin C2 domain with lipid membranes
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-12-04 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.953697 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 45.009, 59.828, 125.919 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.383 - 2.666 |
R-factor | 0.1709 |
Rwork | 0.168 |
R-free | 0.21530 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3nsj |
RMSD bond length | 0.002 |
RMSD bond angle | 0.648 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | PHENIX ((phenix.refine: 1.9_1692)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 42.388 | 2.810 |
High resolution limit [Å] | 2.666 | 2.666 |
Rmerge | 0.071 | 0.182 |
Number of reflections | 5115 | |
<I/σ(I)> | 21.25 | |
Completeness [%] | 99.7 | |
Redundancy | 2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | 0.1 M HEPES sodium pH 7.5, 0.2 M calcium chloride dihydrate and 14% v/v polyethylene glycol 400 |