4XEG
Structure of the enzyme-product complex resulting from TDG action on a G/hmU mismatch
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL7-1 |
Synchrotron site | SSRL |
Beamline | BL7-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-06-10 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97948 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 89.199, 53.393, 82.220 |
Unit cell angles | 90.00, 95.42, 90.00 |
Refinement procedure
Resolution | 39.140 - 1.720 |
R-factor | 0.1904 |
Rwork | 0.188 |
R-free | 0.23150 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4fnc |
RMSD bond length | 0.017 |
RMSD bond angle | 1.897 |
Data reduction software | XDS (0.1.26) |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0073) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 39.140 | 39.140 | 1.750 |
High resolution limit [Å] | 1.720 | 9.090 | 1.720 |
Rmerge | 0.038 | 0.016 | 0.918 |
Rpim | 0.016 | 0.007 | 0.491 |
Total number of observations | 266180 | 1943 | 5027 |
Number of reflections | 40036 | ||
<I/σ(I)> | 23.8 | 101 | 1.4 |
Completeness [%] | 97.2 | 97.8 | 62.1 |
Redundancy | 6.6 | 6.6 | 3.8 |
CC(1/2) | 1.000 | 1.000 | 0.761 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 295 | 20% (w/v) PEG 4000, 0.2 M ammonium acetate, 0.1 M sodium acetate, pH 6.0 |