4WHV
E3 ubiquitin-protein ligase RNF8 in complex with Ubiquitin-conjugating enzyme E2 N and Polyubiquitin-B
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 12.3.1 |
Synchrotron site | ALS |
Beamline | 12.3.1 |
Temperature [K] | 105 |
Detector technology | CCD |
Collection date | 2013-07-19 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 1.03321 |
Spacegroup name | P 64 2 2 |
Unit cell lengths | 341.379, 341.379, 113.447 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 49.274 - 8.300 |
R-factor | 0.3298 |
Rwork | 0.329 |
R-free | 0.33740 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4orh |
RMSD bond length | 0.007 |
RMSD bond angle | 1.089 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Refinement software | PHENIX ((phenix.refine: 1.9_1692)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 8.600 |
High resolution limit [Å] | 8.300 | 17.640 | 8.300 |
Rmerge | 0.191 | 0.055 | 0.901 |
Total number of observations | 89114 | ||
Number of reflections | 4094 | ||
<I/σ(I)> | 6.7 | ||
Completeness [%] | 100.0 | 100 | 100 |
Redundancy | 21.8 | 13.3 | 24.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 298 | 1.04 M (NH4)2HPO4 |