4U3D
LpxC from A.Aaeolicus in complex with 4-[[4-[2-[4-(morpholinomethyl)phenyl]ethynyl]phenoxy]methyl]tetrahydropyran-4-carbohydroxamic acid (compound 9)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 110 |
Detector technology | PIXEL |
Collection date | 2012-07-16 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.0 |
Spacegroup name | P 61 |
Unit cell lengths | 65.865, 65.865, 133.282 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 35.050 - 1.250 |
R-factor | 0.1581 |
Rwork | 0.158 |
R-free | 0.16830 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2go4 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.090 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.20) |
Refinement software | BUSTER (2.11.5) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 133.282 | 133.282 | 1.310 |
High resolution limit [Å] | 1.246 | 3.940 | 1.250 |
Rmerge | 0.042 | 0.537 | |
Rmeas | 0.080 | ||
Rpim | 0.024 | 0.014 | 0.176 |
Total number of observations | 958795 | 30820 | 137480 |
Number of reflections | 89070 | ||
<I/σ(I)> | 20.9 | 50 | 4.3 |
Completeness [%] | 97.8 | 100 | 95.8 |
Redundancy | 10.8 | 10.5 | 10.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.4 | 291 | Protein solution: 25 mM Tris-HCl, pH 8.0, 0.15 M NaCl, 0.1 mM ZnSO4, 5% glycerol, 1 mM inhibitor. Well solution: 15% PEG 550 MME, 15% PEG 20K, 50 mM Imidazole and 50 mM MES (Morpheus buffer 1), pH 6.5, 2% 1,6-Hexanediol; 2% 1-Butanol 1,2-Propanediol (racemic); 2% 2-Propanol; 2% 1,4-Butanediol; 2% 1,3-Propanediol |