4U1N
HLA class I micropolymorphisms determine peptide-HLA landscape and dictate differential HIV-1 escape through identical epitopes
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I02 |
Synchrotron site | Diamond |
Beamline | I02 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2012-12-06 |
Detector | PSI PILATUS 6M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 50.980, 81.230, 110.470 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 81.230 - 1.770 |
R-factor | 0.1655 |
Rwork | 0.164 |
R-free | 0.19900 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4i4w |
RMSD bond length | 0.020 |
RMSD bond angle | 2.040 |
Data reduction software | XDS (0.1.27) |
Data scaling software | Aimless (2.1.4) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0049) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 81.230 | 81.230 | 1.820 |
High resolution limit [Å] | 1.770 | 7.920 | 1.770 |
Rmerge | 0.090 | 0.021 | 0.752 |
Rpim | 0.035 | 0.009 | 0.296 |
Total number of observations | 334467 | 4058 | 24523 |
Number of reflections | 45559 | ||
<I/σ(I)> | 17.7 | 64.5 | 2.8 |
Completeness [%] | 100.0 | 99.9 | 100 |
Redundancy | 7.3 | 6.7 | 7.4 |
CC(1/2) | 0.999 | 1.000 | 0.803 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 291 | 10% PEG 6000, 10mM magnesium chloride |