4TWP
The crystal structure of human abl1 T315I gatekeeper mutant kinase domain in complex with axitinib
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-03-27 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.000 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 56.818, 113.801, 131.164 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 52.137 - 2.400 |
R-factor | 0.2132 |
Rwork | 0.212 |
R-free | 0.24140 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.009 |
RMSD bond angle | 1.126 |
Data scaling software | SCALA (3.3.20) |
Phasing software | PHASER |
Refinement software | PHENIX ((phenix.refine: 1.7.1_743)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 85.957 | 65.582 | 2.530 |
High resolution limit [Å] | 2.400 | 7.590 | 2.400 |
Rmerge | 0.017 | 0.624 | |
Rmeas | 0.066 | ||
Rpim | 0.026 | 0.009 | 0.277 |
Total number of observations | 220382 | 6766 | 33362 |
Number of reflections | 34049 | ||
<I/σ(I)> | 22.7 | 67.3 | 3.3 |
Completeness [%] | 99.9 | 99.3 | 100 |
Redundancy | 6.5 | 5.6 | 6.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 286.15 | 0.1 M HEPES (pH 7.00) 15.0 %w/v PEG 3350 0.01 M Magnesium chloride hexahydrate 0.0050 M Nickel(II) chloride hexahydrate 5.0 %v/v Glycerol |