Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4R05

Crystal structure of the refolded DENV3 methyltransferase

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2013-05-13
DetectorRIGAKU RAXIS IV++
Wavelength(s)1.5418
Spacegroup nameP 1
Unit cell lengths44.688, 48.386, 68.073
Unit cell angles79.11, 78.75, 69.71
Refinement procedure
Resolution33.092 - 2.100
R-factor0.2526
Rwork0.250
R-free0.30720
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3p8z
RMSD bond length0.004
RMSD bond angle0.821
Data reduction softwareCrystalClear
Data scaling softwareCrystalClear
Phasing softwarePHASER
Refinement softwarePHENIX ((phenix.refine: 1.8.4_1496))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]45.0002.180
High resolution limit [Å]2.1002.100
Rmerge0.1230.450
Number of reflections28779
<I/σ(I)>3.91.3
Completeness [%]94.992.7
Redundancy2.12.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5.629850 mM sodium citrate, pH 5.6, 24-30% PEG 4,000, 5% saturated ammonium sulfate, 10% glycerol, 0-20% DMSO, and 5 mM DTT, VAPOR DIFFUSION, HANGING DROP, temperature 298K

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon