4P2T
Crystal structure of Kaposi's sarcoma-associated herpesvirus (KSHV) protease in complex with a dimer disruptor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.3.1 |
Synchrotron site | ALS |
Beamline | 8.3.1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-09-17 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.0 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 69.737, 95.947, 119.245 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 74.753 - 2.150 |
R-factor | 0.1911 |
Rwork | 0.185 |
R-free | 0.25230 |
Starting model (for MR) | 3njq |
RMSD bond length | 0.003 |
RMSD bond angle | 0.788 |
Data scaling software | SCALA (3.2.5) |
Phasing software | PHASER (2.1) |
Refinement software | PHENIX ((phenix.refine: 1.8.4_1496)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 74.753 | 74.753 | 2.200 |
High resolution limit [Å] | 2.090 | 6.610 | 2.090 |
Rmerge | 0.118 | 0.032 | 0.708 |
Total number of observations | 150688 | 5689 | 11776 |
Number of reflections | 22809 | ||
<I/σ(I)> | 18.1 | 87.9 | 1.7 |
Completeness [%] | 94.8 | 100 | 72.6 |
Redundancy | 6.6 | 6.7 | 4.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.8 | 298 | 0.1M sodium acetate pH 7.8, 0.88 M NaH2PO4, 1.32 M K2HPO4, 0.2 M KCl |