4NBP
Crystal structure of the JCV large T-antigen origin binding domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X29A |
Synchrotron site | NSLS |
Beamline | X29A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-04-13 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.075 |
Spacegroup name | P 41 |
Unit cell lengths | 64.663, 64.663, 37.493 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.700 - 1.315 |
R-factor | 0.1554 |
Rwork | 0.154 |
R-free | 0.17850 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.017 |
RMSD bond angle | 1.610 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX ((phenix.refine: 1.8.4_1496)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 45.700 | 50.000 | 1.370 |
High resolution limit [Å] | 1.315 | 2.840 | 1.320 |
Rmerge | 0.093 | 0.074 | 0.658 |
Number of reflections | 36181 | ||
<I/σ(I)> | 29.6 | ||
Completeness [%] | 97.8 | 100 | 99.4 |
Redundancy | 16 | 20.2 | 12.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | 0.19 M sodium tartrate, 19 % Peg 3350, VAPOR DIFFUSION, SITTING DROP, temperature 277K |