Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4K12

Structural Basis for Host Specificity of Factor H Binding by Streptococcus pneumoniae

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-G
Synchrotron siteAPS
Beamline21-ID-G
Temperature [K]100
Detector technologyCCD
Collection date2012-10-14
DetectorMARMOSAIC 300 mm CCD
Wavelength(s)0.97856
Spacegroup nameP 21 21 21
Unit cell lengths41.587, 48.985, 71.382
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution19.964 - 1.079
R-factor0.1552
Rwork0.154
R-free0.17030
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.011
RMSD bond angle1.243
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwarePHASER (2.3.0)
Refinement softwarePHENIX (1.7.1_743)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0001.120
High resolution limit [Å]1.0792.3301.079
Rmerge0.0440.0300.359
Number of reflections63150
<I/σ(I)>15.1
Completeness [%]99.696.899.7
Redundancy6.96.85.9
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP4.629320% PEG3500, 0.1 M sodium acetate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
2VAPOR DIFFUSION, HANGING DROP4.629320% PEG3500, 0.1 M sodium acetate, soaked in 0.5 M sodium iodide, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon