Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

4EBE

Conformationally Restrained North-methanocarba-2'-deoxyadenosine Corrects the Error-Prone Nature of Human DNA Polymerase Iota

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-E
Synchrotron siteAPS
Beamline24-ID-E
Temperature [K]110
Detector technologyCCD
Collection date2011-12-09
DetectorADSC QUANTUM 315
Wavelength(s)0.979
Spacegroup nameP 65 2 2
Unit cell lengths98.233, 98.233, 202.067
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution44.173 - 2.100
R-factor0.2222
Rwork0.220
R-free0.26480
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3gv5
RMSD bond length0.011
RMSD bond angle1.407
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHENIX
Refinement softwarePHENIX ((phenix.refine: 1.7.3_928))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]85.0722.180
High resolution limit [Å]2.1002.100
Rmerge0.0540.617
Number of reflections34416
<I/σ(I)>24.51.6
Completeness [%]93.386
Redundancy5.35.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.927720 mM Tris-HCl, pH 7.9, 5% glycerol, 10 mM 2-mercaptoethanol, 150 mM calcium chloride, 10% PEG3350, VAPOR DIFFUSION, SITTING DROP, temperature 277K

237992

PDB entries from 2025-06-25

PDB statisticsPDBj update infoContact PDBjnumon