Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

4EBE

Conformationally Restrained North-methanocarba-2'-deoxyadenosine Corrects the Error-Prone Nature of Human DNA Polymerase Iota

Functional Information from GO Data
ChainGOidnamespacecontents
A0003684molecular_functiondamaged DNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues24
DetailsBINDING SITE FOR RESIDUE DTP A 501
ChainResidue
ALEU35
ALEU78
AASP126
ALYS214
ACA503
AHOH609
AHOH791
AHOH807
AHOH825
AHOH843
AHOH847
AASP36
AHOH848
AHOH849
PDOC7
TDT4
TDG5
ACYS37
APHE38
ATYR39
ATHR65
ATYR68
AARG71
ALYS77

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 502
ChainResidue
AASP34
AGLU127
AHOH789
AHOH825
AHOH847
AHOH849

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 503
ChainResidue
AASP34
ALEU35
AASP126
ADTP501
AHOH825
AHOH849

site_idAC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE CA A 504
ChainResidue
ALYS237
AILE239
AILE242
AHOH751
AHOH808
AHOH809
PDC6
PHOH113

site_idAC5
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A 505
ChainResidue
AASP98
ATHR100
AGLU304
AHOH716
AHOH794
AHOH816
AHOH846
AHOH852
TDG6

site_idAC6
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL T 501
ChainResidue
AGLU305
AARG357
AHOH814
TDG5
TDG6
THOH604
THOH620
THOH621

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues213
DetailsDomain: {"description":"UmuC","evidences":[{"source":"PROSITE-ProRule","id":"PRU00216","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues65
DetailsRegion: {"description":"DNA-binding","evidences":[{"source":"PubMed","id":"15254543","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27555320","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1T3N","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5KT2","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5KT4","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5KT6","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues1
DetailsActive site: {"description":"Proton acceptor","evidences":[{"source":"PROSITE-ProRule","id":"PRU00216","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues3
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"27555320","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5KT5","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues2
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"15254543","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1T3N","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

245663

PDB entries from 2025-12-03

PDB statisticsPDBj update infoContact PDBjnumon