4ZPK
Crystal Structure of the Heterodimeric HIF-2a:ARNT Complex with HRE DNA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-12-05 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97929 |
Spacegroup name | P 43 |
Unit cell lengths | 65.746, 65.746, 245.929 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 32.873 - 3.600 |
R-factor | 0.2381 |
Rwork | 0.234 |
R-free | 0.32130 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4zp4 |
RMSD bond length | 0.004 |
RMSD bond angle | 0.883 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.660 |
High resolution limit [Å] | 3.600 | 9.750 | 3.600 |
Rmerge | 0.097 | 0.046 | 0.722 |
Rmeas | 0.114 | 0.055 | 0.852 |
Rpim | 0.059 | 0.029 | 0.449 |
Total number of observations | 45153 | ||
Number of reflections | 12149 | ||
<I/σ(I)> | 7.9 | ||
Completeness [%] | 99.5 | 97.3 | 99.5 |
Redundancy | 3.7 | 3.6 | 3.5 |
CC(1/2) | 0.985 | 0.681 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 289 | 4% Tacsimate, pH 6.0, 10% PEG3350 |