4YMB
Structure of the ligand-binding domain of GluK1 in complex with the antagonist CNG10111
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX II BEAMLINE I911-3 |
Synchrotron site | MAX II |
Beamline | I911-3 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-12-15 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 1.000 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 71.813, 71.813, 230.126 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 44.900 - 1.930 |
R-factor | 0.1811 |
Rwork | 0.179 |
R-free | 0.21990 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4dld |
RMSD bond length | 0.009 |
RMSD bond angle | 1.103 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.20) |
Phasing software | PHASER (2.5.1) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 68.553 | 46.457 | 2.030 |
High resolution limit [Å] | 1.930 | 6.100 | 1.930 |
Rmerge | 0.037 | 0.338 | |
Rmeas | 0.076 | ||
Rpim | 0.028 | 0.017 | 0.141 |
Total number of observations | 347630 | 11339 | 45023 |
Number of reflections | 46519 | ||
<I/σ(I)> | 18.1 | 33.4 | 5.6 |
Completeness [%] | 100.0 | 99.8 | 99.9 |
Redundancy | 7.5 | 6.7 | 6.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 280 | PEG8000, lithium sulfate, TRIS |