4YLU
X-ray structure of MERS-CoV nsp5 protease bound with a non-covalent inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-G |
Synchrotron site | APS |
Beamline | 21-ID-G |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-06-12 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.9786 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 63.439, 114.930, 92.341 |
Unit cell angles | 90.00, 90.89, 90.00 |
Refinement procedure
Resolution | 42.587 - 2.100 |
R-factor | 0.1606 |
Rwork | 0.159 |
R-free | 0.21510 |
RMSD bond length | 0.013 |
RMSD bond angle | 1.288 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.8.4_1496) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.140 |
High resolution limit [Å] | 2.100 | 5.700 | 2.100 |
Rmerge | 0.088 | 0.046 | 0.586 |
Rmeas | 0.114 | 0.052 | 0.736 |
Rpim | 0.054 | 0.025 | 0.353 |
Total number of observations | 322955 | ||
Number of reflections | 76865 | ||
<I/σ(I)> | 11.17 | 1.83 | |
Completeness [%] | 96.8 | 99.3 | 93.8 |
Redundancy | 4.2 | 4.1 | 4.1 |
CC(1/2) | 0.996 | 0.844 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 293 | 0.2 M ammonium acetate, 0.1 M Bis-Tris pH-5.5, 12% PEG-3350 |