4W4Z
Structure of the EphA4 LBD in complex with peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E SUPERBRIGHT |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2013-06-07 |
Detector | RIGAKU RAXIS HTC |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 37.220, 127.190, 84.599 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.140 - 2.410 |
R-factor | 0.1767 |
Rwork | 0.173 |
R-free | 0.24060 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.419 |
Data reduction software | MOSFLM |
Data scaling software | Aimless (0.2.1) |
Refinement software | REFMAC (5.8.0073) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.830 | 50.830 | 2.510 |
High resolution limit [Å] | 2.410 | 8.690 | 2.410 |
Rmerge | 0.067 | 0.042 | 0.226 |
Rpim | 0.041 | 0.025 | 0.138 |
Total number of observations | 99518 | 2456 | 9181 |
Number of reflections | 27979 | ||
<I/σ(I)> | 13.1 | 20.6 | 4.8 |
Completeness [%] | 92.3 | 98.1 | 80.6 |
Redundancy | 3.6 | 3.7 | 3.3 |
CC(1/2) | 0.996 | 0.997 | 0.935 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 298 | 0.2M MgCl2, 0.1M Tris pH8.5, 25% PEG3350, 3% 1,6-hexanediol |