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43NO

Crystal structure of a de novo-designed Binder targeting VEGFA

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsHEPS BEAMLINE ID02U1A
Synchrotron siteHEPS
BeamlineID02U1A
Temperature [K]100
Detector technologyPIXEL
Collection date2026-06-18
DetectorDECTRIS EIGER X 9M
Wavelength(s)0.97907
Spacegroup nameP 1 21 1
Unit cell lengths78.280, 94.280, 88.300
Unit cell angles90.00, 110.28, 90.00
Refinement procedure
Resolution43.050 - 2.300
R-factor0.21689
Rwork0.215
R-free0.25750
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.008
RMSD bond angle1.434
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0267)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]43.0502.370
High resolution limit [Å]2.3002.300
Number of reflections535624574
<I/σ(I)>12.1
Completeness [%]99.999.9
Redundancy4.7
CC(1/2)0.9980.742
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION2910.05 M Citric acid, 0.05 M BIS-TRIS propane / pH 5.0, 16% w/v Polyethylene glycol 3,350

258009

PDB entries from 2026-08-12

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