3ZE3
Crystal structure of the integral membrane diacylglycerol kinase - delta7
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-B |
Synchrotron site | APS |
Beamline | 23-ID-B |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-06-13 |
Detector | MARRESEARCH |
Wavelength(s) | 1.03320, 0.97944 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 75.060, 91.540, 143.650 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 51.894 - 2.050 |
R-factor | 0.1969 |
Rwork | 0.196 |
R-free | 0.21670 |
Structure solution method | SAD |
Starting model (for MR) | NONE |
RMSD bond length | 0.003 |
RMSD bond angle | 0.536 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | SHELX (CDE) |
Refinement software | PHENIX ((PHENIX.REFINE)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 58.040 | 2.160 |
High resolution limit [Å] | 2.050 | 2.050 |
Rmerge | 0.110 | 0.850 |
Number of reflections | 62716 | |
<I/σ(I)> | 12.4 | 2 |
Completeness [%] | 99.7 | 99.5 |
Redundancy | 9.3 | 6.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | LIPIDIC CUBIC PHASE | 5.6 | 277 | 3-5 %(V/V) 2-METHYL-2, 4-PENTANEDIOL, 0.1 M SODIUM CHLORIDE, 0.06 M MAGNESIUM ACETATE, 0.1 M SODIUM CITRATE/HCL PH 5.6. CRYSTALLIZED USING THE IN MESO (LIPIDIC CUBIC PHASE) METHOD AT 4 DEGREE CELSIUS WITH THE 7.8 MONOACYLGLYCEROL (7.8 MAG) AS THE HOSTING LIPID. |