3WIH
Crystal structure of the third fibronectin domain (Fn3) of human ROBO1 in complex with the Fab fragment of murine monoclonal antibody B2212A.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL44XU |
Synchrotron site | SPring-8 |
Beamline | BL44XU |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2011-10-05 |
Detector | RAYONIX MX225HE |
Wavelength(s) | 0.90000 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 159.474, 102.601, 97.236 |
Unit cell angles | 90.00, 127.57, 90.00 |
Refinement procedure
Resolution | 14.906 - 1.701 |
R-factor | 0.1916 |
Rwork | 0.189 |
R-free | 0.23620 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1X5H for CHAIN A(B) 3OZ9 for CHAIN L(M) H(I) |
RMSD bond length | 0.003 |
RMSD bond angle | 0.774 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | MOLREP |
Refinement software | REFMAC (5.5.0109) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.760 |
High resolution limit [Å] | 1.700 | 3.660 | 1.700 |
Rmerge | 0.035 | 0.024 | 0.215 |
Number of reflections | 128266 | ||
<I/σ(I)> | 15.4 | ||
Completeness [%] | 94.4 | 94.7 | 91.9 |
Redundancy | 2.9 | 3.4 | 2.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.6 | 293 | 25.5%(w/v) PEG4000, 0.085M Na citrate tribasic dehydrate, 0.17M ammonium acetate, 15%(v/v) glycerol, pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K |