Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3V9P

Crystal structure of Thymidylate kinase from Burkholderia thailandensis

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU FR-E+ SUPERBRIGHT
Temperature [K]100
Detector technologyCCD
Collection date2011-11-11
DetectorRIGAKU SATURN 944+
Wavelength(s)1.5418
Spacegroup nameP 21 21 21
Unit cell lengths68.130, 77.970, 84.130
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution50.000 - 1.900
R-factor0.1833
Rwork0.181
R-free0.21750
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3ld9
RMSD bond length0.012
RMSD bond angle1.451
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMOLREP
Refinement softwareREFMAC
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.0001.950
High resolution limit [Å]1.9008.5001.900
Rmerge0.0910.0230.527
Number of reflections356934622454
<I/σ(I)>15.4756.822.3
Completeness [%]99.298.993.8
Redundancy5.962.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.5290EBS Wizard 3/4 screen h6: 30% MPD, 25% PEG 1500, 100mM HOAc/NAOAC; protein ButhA.01616.a.A1 PS01176 at 56.3 mg/ml, pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 290K

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon