3QV7
Crystal structure of Leishmania mexicana pyruvate kinase(LmPYK)in complex with ponceau S and acid blue 25.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Detector technology | CCD |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 1 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 182.109, 164.798, 123.348 |
Unit cell angles | 90.00, 115.80, 90.00 |
Refinement procedure
Resolution | 21.140 - 2.700 |
R-factor | 0.21677 |
Rwork | 0.215 |
R-free | 0.24414 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1pkl |
RMSD bond length | 0.006 |
RMSD bond angle | 0.859 |
Refinement software | REFMAC (5.5.0109) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 21.140 | 21.140 | 2.850 |
High resolution limit [Å] | 2.700 | 8.540 | 2.700 |
Rmerge | 0.123 | 0.040 | 0.542 |
Number of reflections | 89354 | ||
<I/σ(I)> | 10.2 | 33.8 | 2.1 |
Completeness [%] | 100.0 | 100 | 100 |
Redundancy | 3.7 | 3.7 | 3.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.2 | 277 | 7-16% PEG 8,000, 20 mM TEA buffer (pH 7.2), 50 mM MgCl2, 100 mM KCl and 10-25% glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 277K |