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3QV7

Crystal structure of Leishmania mexicana pyruvate kinase(LmPYK)in complex with ponceau S and acid blue 25.

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I03
Synchrotron siteDiamond
BeamlineI03
Detector technologyCCD
DetectorADSC QUANTUM 315
Wavelength(s)1
Spacegroup nameC 1 2 1
Unit cell lengths182.109, 164.798, 123.348
Unit cell angles90.00, 115.80, 90.00
Refinement procedure
Resolution21.140 - 2.700
R-factor0.21677
Rwork0.215
R-free0.24414
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1pkl
RMSD bond length0.006
RMSD bond angle0.859
Refinement softwareREFMAC (5.5.0109)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]21.14021.1402.850
High resolution limit [Å]2.7008.5402.700
Rmerge0.1230.0400.542
Number of reflections89354
<I/σ(I)>10.233.82.1
Completeness [%]100.0100100
Redundancy3.73.73.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.22777-16% PEG 8,000, 20 mM TEA buffer (pH 7.2), 50 mM MgCl2, 100 mM KCl and 10-25% glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 277K

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PDB entries from 2024-10-30

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