3P6Z
Structural basis of thrombin mediated factor V activation: essential role of the hirudin-like sequence Glu666-Glu672 for processing at the heavy chain-B domain junction
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-1 |
Synchrotron site | ESRF |
Beamline | ID23-1 |
Temperature [K] | 298 |
Detector technology | CCD |
Collection date | 2009-03-04 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9725 |
Spacegroup name | P 1 |
Unit cell lengths | 52.208, 62.259, 67.510 |
Unit cell angles | 99.38, 110.46, 92.26 |
Refinement procedure
Resolution | 31.920 - 1.700 |
R-factor | 0.20059 |
Rwork | 0.200 |
R-free | 0.23876 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1ppb |
RMSD bond length | 0.023 |
RMSD bond angle | 2.032 |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | MOLREP |
Refinement software | REFMAC (5.5.0072) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 62.140 | 1.790 |
High resolution limit [Å] | 1.690 | 1.696 |
Rmerge | 0.080 | |
Number of reflections | 81788 | |
<I/σ(I)> | 12.3 | |
Completeness [%] | 94.2 | 89.6 |
Redundancy | 3.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | 100 mM MOPS/HEPES-Na, pH 7.5, 12.5% (w/v) PEG 1000, 12.5% (w/v) PEG 3350, 12.5% (v/v) 2-methylpentane-2,4-diol (MPD), 30 mM Ca2+, 30 mM Mg2+, VAPOR DIFFUSION, HANGING DROP, temperature 293K |