3P48
Structure of the yeast dUTPase DUT1 in complex with dUMPNPP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-08-24 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.979 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 51.784, 58.868, 112.381 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 28.470 - 1.670 |
R-factor | 0.156 |
Rwork | 0.154 |
R-free | 0.19300 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3f4f |
RMSD bond length | 0.017 |
RMSD bond angle | 1.656 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | MOLREP |
Refinement software | PHENIX ((phenix.refine: 1.6.4_486)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.430 | 1.760 |
High resolution limit [Å] | 1.670 | 1.670 |
Rmerge | 0.043 | 0.239 |
Number of reflections | 40597 | |
<I/σ(I)> | 28.4 | 8.2 |
Completeness [%] | 96.1 | 99.8 |
Redundancy | 6.3 | 6.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 293 | 30% Jeffamine ED-2001, 0.1M HEPES pH7, 3mM MgCl2, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K |