3I6K
Newly identified epitope from SARS-CoV membrane protein complexed with HLA-A*0201
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2008-09-14 |
Detector | RIGAKU RAXIS VII |
Wavelength(s) | 1.54178 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 65.540, 108.028, 134.975 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 32.209 - 2.800 |
R-factor | 0.1999 |
Rwork | 0.198 |
R-free | 0.24350 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1jf1 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.656 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | AMoRE |
Refinement software | PHENIX ((phenix.refine)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 32.209 | 50.000 | 2.850 |
High resolution limit [Å] | 2.750 | 5.920 | 2.750 |
Rmerge | 0.170 | 0.083 | 0.475 |
Rmeas | 0.170 | ||
Total number of observations | 173044 | ||
Number of reflections | 25460 | ||
<I/σ(I)> | 15.836 | 4.821 | |
Completeness [%] | 99.5 | 98.9 | 98.8 |
Redundancy | 6.8 | 6.3 | 6.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 277 | 0.1M BIS-TRIS pH 5.5, 10% w/v Polyethylene glycol 3350, VAPOR DIFFUSION, HANGING DROP, temperature 277K |