3HIT
Crystal structure of Saporin-L1 in complex with the dinucleotide inhibitor, a transition state analogue
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2008-11-05 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.979 |
Spacegroup name | P 1 |
Unit cell lengths | 50.716, 53.069, 54.491 |
Unit cell angles | 78.65, 65.85, 80.83 |
Refinement procedure
Resolution | 51.850 - 2.290 |
R-factor | 0.17492 |
Rwork | 0.172 |
R-free | 0.22872 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.011 |
RMSD bond angle | 1.357 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Refinement software | REFMAC (5.4.0069) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 51.850 | 20.000 | 2.380 |
High resolution limit [Å] | 2.290 | 4.930 | 2.290 |
Rmerge | 0.056 | 0.042 | 0.107 |
Number of reflections | 22181 | ||
<I/σ(I)> | 14.636 | ||
Completeness [%] | 98.2 | 99.2 | 97.7 |
Redundancy | 3.2 | 3.2 | 3.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 291 | 20% PEG2000MME, 0.1M sodium acetate, 0.4M potassium thiocyanate, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K |