3ERD
HUMAN ESTROGEN RECEPTOR ALPHA LIGAND-BINDING DOMAIN IN COMPLEX WITH DIETHYLSTILBESTROL AND A GLUCOCORTICOID RECEPTOR INTERACTING PROTEIN 1 NR BOX II PEPTIDE
Replaces: 2ERDExperimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL7-1 |
Synchrotron site | SSRL |
Beamline | BL7-1 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 1998-05 |
Detector | MARRESEARCH |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 54.094, 82.217, 58.041 |
Unit cell angles | 90.00, 111.33, 90.00 |
Refinement procedure
Resolution | 27.000 - 2.030 |
R-factor | 0.196 * |
Rwork | 0.196 |
R-free | 0.24800 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2lbd |
RMSD bond length | 0.005 |
RMSD bond angle | 21.600 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | X-PLOR (3.854) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 27.000 | 2.070 |
High resolution limit [Å] | 2.030 | 2.030 |
Rmerge | 0.078 * | 0.519 * |
Total number of observations | 104189 * | |
Number of reflections | 30265 | |
<I/σ(I)> | 9.8 | 1.8 |
Completeness [%] | 98.4 | 98 |
Redundancy | 3.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion, hanging drop * | 8.5 | 19-21 * | WELL: 25-27%(W/V) PEG 4000, 0.180 M SODIUM ACETATE, 0.90 M TRIS PH 8.75-9.0 PROTEIN: 4.3 G/L TEMPERATURE: 19-21 DEGREES C, pH 8.5 |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 4.3 (mg/ml) | |
2 | 1 | reservoir | PEG4000 | 25-27 (%(w/v)) | |
3 | 1 | reservoir | Tris-HCl | 90 (mM) | |
4 | 1 | reservoir | Na acetate | 180 (mM) |