3CJF
Crystal structure of VEGFR2 in complex with a 3,4,5-trimethoxy aniline containing pyrimidine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2000-03-01 |
Detector | MAR CCD 165 mm |
Wavelength(s) | 1.000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 37.435, 94.742, 96.797 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 34.920 - 2.150 |
R-factor | 0.20518 |
Rwork | 0.204 |
R-free | 0.25813 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Unliganded Vegfr2 kinase domain solved in house - similar to pdb entry 1VR2 |
RMSD bond length | 0.011 |
RMSD bond angle | 1.309 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | REFMAC (5.2.0019) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.000 | 2.230 |
High resolution limit [Å] | 2.150 | 2.150 |
Rmerge | 0.042 | 0.423 |
Number of reflections | 18596 | |
<I/σ(I)> | 42.4 | 2.3 |
Completeness [%] | 96.3 | 74.3 |
Redundancy | 6.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | VAPOR DIFFUSION, HANGING DROP |