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3V2A

VEGFR-2/VEGF-A COMPLEX STRUCTURE

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X06SA
Synchrotron siteSLS
BeamlineX06SA
Temperature [K]100
Detector technologyPIXEL
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.9999
Spacegroup nameP 65 2 2
Unit cell lengths80.969, 80.969, 332.063
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution68.608 - 3.204
R-factor0.2471
Rwork0.244
R-free0.30050
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)VEGF-E and VEGFR-2 VEGF-C complex structure
RMSD bond length0.004
RMSD bond angle0.834
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX ((phenix.refine: 1.7_650))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]68.6083.400
High resolution limit [Å]3.2003.200
<I/σ(I)>1.25
Completeness [%]95.994.1
Redundancy2.12.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.52930.1 M NaCl, 1.6 M ammonium sulfate, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K

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PDB entries from 2024-05-15

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