3V2A
VEGFR-2/VEGF-A COMPLEX STRUCTURE
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9999 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 80.969, 80.969, 332.063 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 68.608 - 3.204 |
R-factor | 0.2471 |
Rwork | 0.244 |
R-free | 0.30050 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | VEGF-E and VEGFR-2 VEGF-C complex structure |
RMSD bond length | 0.004 |
RMSD bond angle | 0.834 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX ((phenix.refine: 1.7_650)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 68.608 | 3.400 |
High resolution limit [Å] | 3.200 | 3.200 |
<I/σ(I)> | 1.25 | |
Completeness [%] | 95.9 | 94.1 |
Redundancy | 2.1 | 2.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | 0.1 M NaCl, 1.6 M ammonium sulfate, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K |